Class GtexExperiment

java.lang.Object
org.snpeff.gtex.GtexExperiment
public class GtexExperiment extends Object
A 'column' in a GTEx file (values from one experiment
Author:
pcingola

  • Constructor Details

    • GtexExperiment

      public GtexExperiment(Gtex gtex, String line)

    • GtexExperiment

      public GtexExperiment(Gtex gtex, String id, String tissueType, String tissueTypeDetail)

  • Method Details

    • add

      public void add(double value)

    • getGtex

      public Gtex getGtex()

    • getId

      public String getId()

    • getTissueType

      public String getTissueType()

    • getTissueTypeDetail

      public String getTissueTypeDetail()

    • getValue

      public double getValue(int idx)

    • getValue

      public double getValue(String geneId)
      Get value by geneID
      Parameters:
      geneId -
      Returns:

    • parse

      protected void parse(String line)

    • size

      public int size()

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • toStringAll

      public String toStringAll()