Class NextProtXmlEntry

Method Details

• add

  public void add(NextProtXmlAnnotation ann)

  Add an annotation

• addIsoformSequence

  public void addIsoformSequence(String isoformAccession, String sequence)

  Add an Isoform sequence

• addMarkers

  public void addMarkers(NextProtMarkerFactory markersFactory)

  Create all Markers for this entry

• getAnnotations

  public List<NextProtXmlAnnotation> getAnnotations()

• getHandler

  public NextProtHandler getHandler()

• getIdentifiers

  public Set<org.snpeff.nextProt.Identifier> getIdentifiers()

• getIsoform

  public NextProtXmlIsoform getIsoform(String isoformAccession)

  Get or create an isoform

• getIsoformsByAccession

  public Map<String, NextProtXmlIsoform> getIsoformsByAccession()

• getOrCreateIsoform

  public NextProtXmlIsoform getOrCreateIsoform(String isoformAccession)

• toString

  public String toString()

  Overrides:

  toString in class Object