VcfConsequenceHeader (SnpEff 5.4 API)

java.lang.Object

org.snpeff.vcf.VcfConsequenceHeader

public class VcfConsequenceHeader extends Object

An 'CSQ' entry in a vcf header line

Author:: pablocingolani

Constructor Summary

Constructors

Constructor

Description

VcfConsequenceHeader(VcfFileIterator vcf)
Method Summary

Modifier and Type

Method

Description

String[]

getFieldNames()

Integer

getFieldNum(String fieldName)

String

toString()

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- VcfConsequenceHeader
  
  public VcfConsequenceHeader(VcfFileIterator vcf)
Method Details
- getFieldNames
  
  public String[] getFieldNames()
- getFieldNum
  
  public Integer getFieldNum(String fieldName)
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object